PhytophthoraV1, Main, Exploration, bibRecord, 001960

Comparison of the chromosome maps around a resistance hot spot on chromosome 5 of potato and tomato using BAC-FISH painting.

Identifieur interne : 001960 ( Main/Exploration ); précédent : 001959; suivant : 001961

Comparison of the chromosome maps around a resistance hot spot on chromosome 5 of potato and tomato using BAC-FISH painting.

Auteurs : Ute C. Achenbach [Allemagne] ; Xiaomin Tang ; Agim Ballvora ; Hans De Jong ; Christiane Gebhardt

Source :

Genome [ 1480-3321 ] ; 2010.

RBID : pubmed:20140028

Descripteurs français

English descriptors

KwdEn :
- Chromosomes, Artificial, Bacterial (MeSH), Chromosomes, Plant (MeSH), Fluorescent Dyes (metabolism), Genetic Markers (MeSH), Immunity, Innate (genetics), In Situ Hybridization, Fluorescence (MeSH), Indoles (metabolism), Lycopersicon esculentum (genetics), Physical Chromosome Mapping (MeSH), Quantitative Trait Loci (MeSH), Solanum tuberosum (genetics).
MESH :
- chemical , metabolism : Fluorescent Dyes, Indoles.
- genetics : Immunity, Innate, Lycopersicon esculentum, Solanum tuberosum.
- Chromosomes, Artificial, Bacterial, Chromosomes, Plant, Genetic Markers, In Situ Hybridization, Fluorescence, Physical Chromosome Mapping, Quantitative Trait Loci.

Abstract

Potato chromosome 5 harbours numerous genes for important qualitative and quantitative traits, such as resistance to the root cyst nematode Globodera pallida and the late blight fungus, Phytophthora infestans. The genes make up part of a "hot spot" for resistances to various pathogens covering a genetic map length of 3 cM between markers GP21 and GP179. We established the physical size and position of this region on chromosome 5 in potato and tomato using fluorescence in situ hybridization (FISH) on pachytene chromosomes. Five potato bacterial artificial chromosome (BAC) clones with the genetically anchored markers GP21, R1-contig (proximal end), CosA, GP179, and StPto were selected, labeled with different fluorophores, and hybridized in a five-colour FISH experiment. Our results showed the location of the BAC clones in the middle of the long arm of chromosome 5 in both potato and tomato. Based on chromosome measurements, we estimate the physical size of the GP21-GP179 interval at 0.85 Mb and 1.2 Mb in potato and tomato, respectively. The GP21-GP179 interval is part of a genome segment known to have inverted map positions between potato and tomato.

DOI: 10.1139/g09-086
PubMed: 20140028

Affiliations:

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Le document en format XML

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<author><name sortKey="Achenbach, Ute C" sort="Achenbach, Ute C" uniqKey="Achenbach U" first="Ute C" last="Achenbach">Ute C. Achenbach</name>
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<term>Genetic Markers (MeSH)</term>
<term>Immunity, Innate (genetics)</term>
<term>In Situ Hybridization, Fluorescence (MeSH)</term>
<term>Indoles (metabolism)</term>
<term>Lycopersicon esculentum (genetics)</term>
<term>Physical Chromosome Mapping (MeSH)</term>
<term>Quantitative Trait Loci (MeSH)</term>
<term>Solanum tuberosum (genetics)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>Cartographie physique de chromosome (MeSH)</term>
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<term>Colorants fluorescents (métabolisme)</term>
<term>Hybridation fluorescente in situ (MeSH)</term>
<term>Immunité innée (génétique)</term>
<term>Indoles (métabolisme)</term>
<term>Locus de caractère quantitatif (MeSH)</term>
<term>Lycopersicon esculentum (génétique)</term>
<term>Marqueurs génétiques (MeSH)</term>
<term>Solanum tuberosum (génétique)</term>
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<term>Indoles</term>
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<term>Chromosomes, Plant</term>
<term>Genetic Markers</term>
<term>In Situ Hybridization, Fluorescence</term>
<term>Physical Chromosome Mapping</term>
<term>Quantitative Trait Loci</term>
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<term>Chromosomes artificiels de bactérie</term>
<term>Chromosomes de plante</term>
<term>Hybridation fluorescente in situ</term>
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<front><div type="abstract" xml:lang="en">Potato chromosome 5 harbours numerous genes for important qualitative and quantitative traits, such as resistance to the root cyst nematode Globodera pallida and the late blight fungus, Phytophthora infestans. The genes make up part of a "hot spot" for resistances to various pathogens covering a genetic map length of 3 cM between markers GP21 and GP179. We established the physical size and position of this region on chromosome 5 in potato and tomato using fluorescence in situ hybridization (FISH) on pachytene chromosomes. Five potato bacterial artificial chromosome (BAC) clones with the genetically anchored markers GP21, R1-contig (proximal end), CosA, GP179, and StPto were selected, labeled with different fluorophores, and hybridized in a five-colour FISH experiment. Our results showed the location of the BAC clones in the middle of the long arm of chromosome 5 in both potato and tomato. Based on chromosome measurements, we estimate the physical size of the GP21-GP179 interval at 0.85 Mb and 1.2 Mb in potato and tomato, respectively. The GP21-GP179 interval is part of a genome segment known to have inverted map positions between potato and tomato.</div>
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<Abstract><AbstractText>Potato chromosome 5 harbours numerous genes for important qualitative and quantitative traits, such as resistance to the root cyst nematode Globodera pallida and the late blight fungus, Phytophthora infestans. The genes make up part of a "hot spot" for resistances to various pathogens covering a genetic map length of 3 cM between markers GP21 and GP179. We established the physical size and position of this region on chromosome 5 in potato and tomato using fluorescence in situ hybridization (FISH) on pachytene chromosomes. Five potato bacterial artificial chromosome (BAC) clones with the genetically anchored markers GP21, R1-contig (proximal end), CosA, GP179, and StPto were selected, labeled with different fluorophores, and hybridized in a five-colour FISH experiment. Our results showed the location of the BAC clones in the middle of the long arm of chromosome 5 in both potato and tomato. Based on chromosome measurements, we estimate the physical size of the GP21-GP179 interval at 0.85 Mb and 1.2 Mb in potato and tomato, respectively. The GP21-GP179 interval is part of a genome segment known to have inverted map positions between potato and tomato.</AbstractText>
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Comparison of the chromosome maps around a resistance hot spot on chromosome 5 of potato and tomato using BAC-FISH painting.

Comparison of the chromosome maps around a resistance hot spot on chromosome 5 of potato and tomato using BAC-FISH painting.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki